Tuesday, July 30, 2013

Dormancy, Persistence & Latency


I proposed the following discussion in this paper.

The terms dormancy, persistence and latency have been used interchangeably in the TB literature generally to refer to the non multiplying state of Mtb, tolerance to TB drugs or an infection without active disease. Although the three conditions are distinct biological phenomena from the host’s perspective, I propose a unified phenomenon when considered from the pathogen’s perspective. Dormancy is a physiological state of Mtb characterized by cessation in proliferation whether in an artificial culture medium or in a host. Persistence describes the tolerance by a subpopulation of bacilli to the bactericidal effects of drugs [Gomez & McKinney, 2004; Lewis, 2007]. This tolerance is phenotypic and transient, because the bacilli remain genetically susceptible to the drugs. Latency is the presence of Mtb infection in a host without clinical symptoms of TB. One-third of the human population is infected with Mtb, but the majority of people who harbor a latent infection lack the clinical symptoms of TB [Dye, 1999].

By contrast, dormancy, persistence and latency could be fundamentally the same from the pathogen’s perspective: dormancy is a physiological state of arrested growth, persistence is survival in the presence of stress from drugs that are administered exogenously and latency is survival in the presence of stress from immune response, which could be in the form of small toxic molecules produced by the host. The Mtb bacilli are affected by toxic molecules whether it is host generated or provided exogenously and in response remain dormant. The treatment of TB is one of the most cumbersome for the patient because it requires a daily intake of a combination of drugs for at least six months. Although >99% of Mtb are killed during the first two weeks [Jindani, 2003], prolonged treatment is required to kill the persisting population that is thought to transiently tolerate the drugs [Gomez & McKinney, 2004; Lewis, 2007]. Therefore, the persister population is highly significant because it is widely believed that the duration of treatment can only be reduced by killing this population sooner.


My colleague Prof. Jacques Grosset's response:
Dear Gyanu,
It is a reasonable attempt but I would like to make two comments: (i) For me, dormancy is an anthropomorphic term convenient to describe multiple puzzling conditions in which bacteria are alive but not multiplying. In other words, using it permits to escape   any reflection on the involved mechanisms; (ii) For the same reason , I wonder the accuracy of your sentence “ I propose a unified phenomenon when considered from the pathogen’s perspective” because  it is anthropomorphism to refer to pathogen’s perspective that suggests that the pathogen is clever, has choice, is making decision, etc. , something that is frequently heard in top brass circles and is 100% scientifically doubtful. The worst example of this type of thinking is to consider that the bug is so clever that it develops resistance to drugs and so on. The book of the Jacques Monod on “Chance and necessity" should be read and re-read.
 
Hi Jacques,
I agree with what you say. It is also my understanding that bacteria (or any other organism including humans) do not have a genetic will but it is the environmental conditions that they are in that selects the fittest to survive and proliferate under the prevailing conditions. I have always maintained (and taught formal classes) that statements such as 'bacteria will become resistant to drugs' are illogical because by it one means that bacteria (or any organism's genetic phenomenon) will change as needed. This is too Lamarckian and has been disproved. I maintain that ' mutation of the genome is an inherent fact of DNA polymerase activity and therefore irrespective of stresses there will be mutantions'. The environmental stresses will only allow the fittest to selectively proliferate'. By "pathogen's perspective" I meant from the perspective of "pathogen's biological machinery which cannot think" but face the stresses. I think we both are saying the same thing, but it must be my choice of words that puzzled you. Your response provides additional clarification to this topic. Thank you. - Gyanu